addObservedSynthesisRateSet {AnaCoDa} | R Documentation |
addObservedSynthesisRateSet
returns the observed
synthesis rates of the genes within the genome specified.
addObservedSynthesisRateSet(genome, observed.expression.file, match.expression.by.id = TRUE)
genome |
A genome object initialized with
|
observed.expression.file |
A string containing the location of a file containing empirical expression rates (optional). |
match.expression.by.id |
If TRUE (default) observed expression values will be assigned by matching sequence identifier. If FALSE observed expression values will be assigned by order |
Returns the genome after adding the new gene expression values
genome_file <- system.file("extdata", "genome.fasta", package = "AnaCoDa") expression_file <- system.file("extdata", "expression.csv", package = "AnaCoDa") ## reading genome genome <- initializeGenomeObject(file = genome_file) ## add expression values after the genome was initiallized, ## or adding an additional set of expression values genome <- addObservedSynthesisRateSet(genome = genome, observed.expression.file = expression_file)