GPC_cpp {BuyseTest} | R Documentation |
GPC_cpp
call for each endpoint and each strata the pairwise comparison function suited to the type of endpoint and store the results.
GPC_cpp(endpoint, censoring, indexC, indexT, threshold, method, D, n_strata, n_TTE, n_UTTE, Wscheme, index_endpoint, index_censoring, index_UTTE, reanalyzed, list_survTimeC, list_survTimeT, list_survJumpC, list_survJumpT, list_lastSurv, correctionUninf, neutralAsUninf, keepScore, reserve, returnOnlyDelta)
endpoint |
A matrix containing the values of each endpoint (in columns) for each observation (in rows). |
censoring |
A matrix containing the values of the censoring variables relative to each endpoint (in columns) for each observation (in rows). |
indexC |
A list containing the indexes of control observations belonging for each strata. |
indexT |
A list containing the indexes of treatment observations belonging for each strata. |
threshold |
Store the thresholds associated to each endpoint. Must have length D. The threshold is ignored for binary endpoints. Must have D columns. |
method |
The index of the method used to score the pairs. Must have length D. 1 for continuous, 2 for Gehan, and 3 for Peron. |
D |
The number of endpoints. |
n_strata |
The number of strata. |
n_TTE |
The number of time-to-event endpoints. |
n_UTTE |
The number of unique time-to-event endpoints. |
Wscheme |
The matrix describing the weighting strategy. For each endpoint (except the first) in column, weights of each pair are initialized at 1 and multiplied by the weight of the endpoints in rows where there is a 1. Must have D lines and D columns. |
index_endpoint |
The position of the endpoint at each priority in the argument endpoint. Must have length D. |
index_censoring |
The position of the censoring at each priority in the argument censoring. Must have length D. |
index_UTTE |
The position, among all the unique tte endpoints, of the TTE endpoints. Equals -1 for non tte endpoints. Must have length n_TTE. |
reanalyzed |
Will this endpoint be re-analyzed latter with a different threshold. |
list_survTimeC |
A list of matrix containing the survival estimates (-threshold, 0, +threshold ...) for each event of the control group (in rows). |
list_survTimeT |
A list of matrix containing the survival estimates (-threshold, 0, +threshold ...) for each event of the treatment group (in rows). |
list_survJumpC |
A list of matrix containing the survival estimates and survival jumps when the survival for the control arm jumps. |
list_survJumpT |
A list of matrix containing the survival estimates and survival jumps when the survival for the treatment arm jumps. |
list_lastSurv |
A list of matrix containing the last survival estimate in each strata (rows) and treatment group (columns). |
correctionUninf |
Should the uninformative weight be re-distributed to favorable and unfavorable? |
neutralAsUninf |
Should paired classified as neutral be re-analyzed using endpoints of lower priority? |
keepScore |
Should the result of each pairwise comparison be kept? |
reserve |
Should vector storing neutral pairs and uninformative pairs be initialized at their maximum possible length? |
returnOnlyDelta |
Should only the net benefit and win ratio be output?. |