Datasets {cubfits} | R Documentation

## Datasets for Demonstrations

### Description

Examples of toy data to test and demonstrate cubfits.

### Usage

      b.Init
      ex.test
      ex.train

### Format

All are in list formats.

### Details

`b.Init` contains two sets (`roc` and `rocnse`) of initial coefficients including mutation and selection parameters for 3 amino acids 'A', 'C', and 'D' in `matrix` format. Both sets are in `b` format.

`ex.train` contains a training set of 100 sequences including 3 `reu13.df` (codon counts in `reu13` data frame format divided by amino acids), 3 `y` (codon counts in simplified data frame format divided by amino acids), 3 `n` (total amino acid counts in vector format divided by amino acids), and `phi.Obs` (observed phi values in vector format).

`ex.test` contains a testing set of the other 100 sequences in the same format of `ex.train`.

### Author(s)

Wei-Chen Chen wccsnow@gmail.com.

### References

https://github.com/snoweye/cubfits/

### See Also

`init.function()`, `cubfits()`, `cubpred()`, and `cubappr()`.

### Examples

    ## Not run:
    suppressMessages(library(cubfits, quietly = TRUE))

    str(b.Init)
    str(ex.test)
    str(ex.train)

    ## End(Not run)

[Package cubfits version 0.1-3 Index]