Posterior Results of Yassour2009 {cubfits} | R Documentation

## Posterior Results of Yassour 2009 Yeast Experiment Dataset

### Description

Output summarized from MCMC posterior results analyzing Yassour 2009 data.

### Usage

      yassour.PM.fits
      yassour.PM.appr
      yassour.info

### Format

These are `list`'s containing several posterior means: `E.Phi` for expected expression, `b.InitList.roc` for parameters, `AA.prob` for proportion of amino acids, `sigmaW` for standard error of measure errors, and `gene.length` for gene length.

### Details

`yassour.PM.fits` and `yassour.PM.appr` are the MCMC output of with/without observed expression, respectively. Both contain posterior means of expected expressions and coefficient parameters: `E.Phi` and `b.InitList.roc` are scaled results such that each MCMC iteration has mean 1 at `E.Phi`.

`yassour.info` contains sequences information (Yeast): `AA.prob` and `gene.length` are summarized from corresponding genes in the analysis.

Note that some of genes may not have good quality of expression or sequence information, so those genes are dropped from `yassour` dataset.

### References

https://github.com/snoweye/cubfits/

### See Also

`yassour`

### Examples

    ## Not run:
    str(yassour.PM.fits)
    str(yassour.PM.appr)
    str(yassour.PM.info)

    ## End(Not run)

[Package cubfits version 0.1-3 Index]