rdemmix {EMMIXskew} | R Documentation |
Generate random number from specified mixture models, including univariate and multivariate Normal distribution, t-distribution, Skew Normal distribution, and Skew t-distribution.
rdemmix(nvect,p,g,distr, mu,sigma,dof=NULL,delta=NULL) rdemmix2(n, p,g,distr,pro,mu,sigma,dof=NULL,delta=NULL) rdemmix3(n, p,g,distr,pro,mu,sigma,dof=NULL,delta=NULL)
nvect |
A vector of how many points in each cluster,c(n1,n2,..,ng) |
n |
The total number of points |
p |
Dimension of data |
g |
The number of clusters |
distr |
A three letter string indicating the distribution type |
pro |
A vector of mixing proportions, see Details. |
mu |
A numeric matrix with each column corresponding to the mean, see Details. |
sigma |
An array of dimension (p,p,g) with first two dimension corresponding covariance matrix of each component, see Details. |
dof |
A vector of degrees of freedom for each component, see Details. |
delta |
A p by g matrix with each column corresponding to a skew parameter vector, see Details. |
The distribution type, determined by the distr
parameter, which may take any one of the following values:
"mvn" for a multivariate normal, "mvt" for a multivariate t-distribution, "msn" for a multivariate skew normal distribution and "mst" for a multivariate skew t-distribution.
pro
, a numeric vector of the mixing proportion of each component; mu
, a p by g matrix with each column as its corresponding mean;
sigma
, a three dimensional p by p by g array with its jth component matrix (p,p,j) as the covariance matrix for jth component of mixture models;
dof
, a vector of degrees of freedom for each component; delta
, a p by g matrix with its columns corresponding to skew parameter vectors.
both rdemmix
and rdemmix2
return an n by p numeric matrix of generated data;
rdemmix3
gives a list with components data
, the generated data, and cluster
, the clustering of data.
McLachlan G.J. and Krishnan T. (2008). The EM Algorithm and Extensions (2nd). New Jersay: Wiley.
McLachlan G.J. and Peel D. (2000). Finite Mixture Models. New York: Wiley.
#specify the dimension of data, and number of clusters #the number of observations in each cluster n1=300;n2=300;n3=400; nn<-c(n1,n2,n3) p=2 g=3 #specify the distribution distr <- "mvn" #specify mean and covariance matrix for each component sigma<-array(0,c(2,2,3)) for(h in 2:3) sigma[,,h]<-diag(2) sigma[,,1]<-cbind( c(1,-0.1),c(-0.1,1)) mu <- cbind(c(4,-4),c(3.5,4),c( 0, 0)) #reset the random seed set.seed(111) #generate the dataset dat <- rdemmix(nn,p,g,distr, mu,sigma) # alternatively one can use pro <- c(0.3,0.3,0.4) n=1000 set.seed(111) dat <- rdemmix2(n,p,g,distr,pro,mu,sigma) plot(dat) # and set.seed(111) dobj <- rdemmix3(n,p,g,distr,pro,mu,sigma) plot(dobj$data) #other distributions such as "mvt","msn", and "mst". #t-distributions dof <- c(3,5,5) dat <- rdemmix2(n,p,g,"mvt",pro,mu,sigma,dof) plot(dat) #Skew Normal distribution delta <- cbind(c(3,3),c(1,5),c(-3,1)) dat <- rdemmix2(n,p,g,"msn",pro,mu,sigma,delta=delta) plot(dat) #Skew t-distribution dat <- rdemmix2(n,p,g,"mst",pro,mu,sigma,dof,delta) plot(dat)