FastLZeroSpikeInference-package | FastLZeroSpikeInference: FastLZeroSpikeInference: A package for estimating spike times from calcium imaging data using an L0 penalty |
estimate_calcium | Estimate underlying calcium concentration based on estimated spikes |
estimate_spikes | Estimate spike train, underlying calcium concentration, and changepoints based on a fluorescence trace. |
estimate_spike_paths | Estimate spike train, underlying calcium concentration, and changepoints based on a fluorescence trace. Automatic tuning parameter selection within a range of values [lambda_min, lambda_max] |
FastLZeroSpikeInference | FastLZeroSpikeInference: FastLZeroSpikeInference: A package for estimating spike times from calcium imaging data using an L0 penalty |
plot.estimated_spikes | Plot the solution to an L0 segmentation problem |
plot.estimated_spike_paths | Plot number of spikes vs. tuning parameter |
plot.simdata | Plot simulated data |
print.estimated_spikes | Print estimated spikes |
print.estimated_spike_paths | Print estimated spike path |
print.simdata | Print simulated data |
simulate_ar1 | Simulate fluorescence trace based on simple AR(1) generative model |