cghInfo {fcros} | R Documentation

## Example of aCGH "info file" for the fcros package.

### Description

This dataset is part of the Agilent 244K design array probes description file which is used in the publicatin of Sircoulomb et al. 2010, BMC Cancer, 10:539. For our illustration, we used only 3 chromosomes (7, 8 and 9) data. The complete data are available in the file "GPL9158-3352.txt", see the Gene Expression Omnibus website and accession number GSE17907.

### Usage

    data(cghInfo)

### Format

A data frame with 33,3613 rows for 7 columns with information on probes.

`Index`:

  a numeric used for the probe

`ProbeName`:

  a text for the unique probe ID

`GeneSymbol`:

  a text with the gene symbol associated with the probe

`Chromosome`:

  a text with the chromosome index associated with the probe

`Start`:

  a start position value for the sequence associated with the probe

`End`:

  an end position value for the sequence associated with the probe

`Cytoband`:

  a text for the cytoband associated with the probe

### Details

This is a part of information obtained from the Agilent 244K design array probes description file.

### References

F Sircoulomb, I Bekhouche, P Finetti, J Adelaide, AB Hamida, J Bonansea, S Raynaud, C Innocenti, E Charafe-Jauffret, C Tarpin, FB Ayed, P Viens, J Jacquemier, F Bertucci, D Birnbaum and M Chaffanet; Genome profiling of ERBB2-amplifief breast cancers. BMC Cancer, 2010, 10:539

### Examples

       data(cghInfo)

       summary(cghInfo)

[Package fcros version 1.6.1 Index]