bott {fcros} | R Documentation

## Example of sequencing data to test the rankReads function.

### Description

This is a subset of data taken from the Bottomly dataset see http://bowtie-bio.sourceforge.net/recount/. The complete dataset has 36,536 rows or ENSEMBL identifiers (genes) and 21 columns (samples). For the "bott" data, the first 5,000 rows, first 3 and last 3 samples were used.

### Usage

    data(bott)

### Format

A data frame with 5,000 rows and 7 columns.

`gene`:

  ENSEMBL ID

`SRX033480`:

  sequencing values for the first B6 mouse

`SRX033488`:

  sequencing values for the second B6 mouse

`SRX033481`:

  sequencing values for the third B6 mouse

`SRX033493`:

  sequencing values for the first D2 mouse

`SRX033486`:

  sequencing values for the second D2 mouse

`SRX033494`:

  sequencing values for the third B6 mouse

### Details

"bott" is a subset of a complet dataset obtained using a single RNA-seq reads from C57BL/6J (B6) and DBA/J2 (D2) mice.

### References

Bottomly et al. Evaluating Gene Expression in C57BL/6J and DBA/J2 Mouse Striatum Using RNA-seq and Microarrays, PLoS One, 6(3)e17820, 2011

### Examples

       data(bott)
       summary(bott)

[Package fcros version 1.6.1 Index]