kin.morgan {gap}R Documentation

kinship matrix for simple pedigree

Description

kinship matrix according to Morgan v2.1

Usage

kin.morgan(ped,verbose=FALSE)

Arguments

ped

individual's id, father's id and mother's id

verbose

an option to print out the original pedigree

Value

The returned value is a list containing:

kin

the kinship matrix in vector form

kin.matrix

the kinship matrix

References

Morgan V2.1 http://www.stat.washington.edu/thompson/Genepi/MORGAN/Morgan.shtml

Note

The input data is required to be sorted so that parents preceed their children

Author(s)

Morgan development team, Jing Hua Zhao

See Also

gif

Examples

## Not run: 
# Werner syndrome pedigree
werner<-c(
 1, 0,  0,  1,
 2, 0,  0,  2,
 3, 0,  0,  2,
 4, 1,  2,  1,
 5, 0,  0,  1,
 6, 1,  2,  2,
 7, 1,  2,  2,
 8, 0,  0,  1,
 9, 4,  3,  2,
10, 5,  6,  1,
11, 5,  6,  2,
12, 8,  7,  1,
13,10,  9,  2,
14,12, 11,  1,
15,14, 13,  1)
werner<-t(matrix(werner,nrow=4))
kin.morgan(werner[,1:3])

## End(Not run)

[Package gap version 1.2.1 Index]