JASPAR-package {JASPAR} | R Documentation |
R modules for JASPAR databases
Package: | JASPAR |
Type: | Package |
License: | GPL (>= 2) |
This package contains:
modules and functions for
JASPAR data processing and visualization.
An overview of functions
Function | Description |
make_template | Make a template that feeds into JASPAR databases |
## To install from online repositories (e.g. CRAN)
install.packages(pkgs="JASPAR",
repos="http://cran.r-project.org")
## Sometimes the offical repository might not be up to
date,
## then you may install it from a downloaded
source file;
## please replace '<current-version>'
with actual version numbers:
install.packages(pkgs="JASPAR_<current-version>.tar.gz",
repos=NULL)
## Load the package and get a complete list of functions,
use
library(JASPAR)
ls("package:JASPAR")
## help documantation of the package
help(JASPAR) #
this page
NULL
Xiaobei Zhao
Maintainer: Xiaobei Zhao xiaobei (at) binf.ku.dk
Zhao et al (2013), "JASPAR 2013: An extensively expanded and updated open-access database of transcription factor binding profiles." (In preparation)
See citation("JASPAR")
for BibTeX entries for
LaTeX users.
require(JASPAR) # load JASPAR help(JASPAR) # a help document of JASPAR ## data(package="JASPAR") # a list of datasets available in JASPAR (TBA) ls("package:JASPAR") # a list of functions available in JASPAR help(package="JASPAR") # help documentation on JASPAR citation("JASPAR") # citation for publications demo("JASPAR-demo") # run the demo ## view JASPAR Description packageDescription("JASPAR") ## ## view JASPAR vignette (TBA) ## vignette("JASPAR-vignette",package="JASPAR")