R: Assing kernelMatrix class to matrix objects

as.kernelMatrix {KERE}

R Documentation

Assing kernelMatrix class to matrix objects

Description

as.kernelMatrix in package KERE can be used to coerce the kernelMatrix class to matrix objects representing a kernel matrix. These matrices can then be used with the kernelMatrix interfaces which most of the functions in KERE support.

Usage

## S4 method for signature 'matrix'
as.kernelMatrix(x, center = FALSE)

Arguments

`x`	matrix to be assigned the `kernelMatrix` class
`center`	center the kernel matrix in feature space (default: FALSE)

Author(s)

Alexandros Karatzoglou
alexandros.karatzoglou@ci.tuwien.ac.at

Examples

## Create toy data
x <- rbind(matrix(rnorm(10),,2),matrix(rnorm(10,mean=3),,2))
y <- matrix(c(rep(1,5),rep(-1,5)))

### Use as.kernelMatrix to label the cov. matrix as a kernel matrix
### which is eq. to using a linear kernel 

K <- as.kernelMatrix(crossprod(t(x)))

K