dpois.hsmm {mhsmm} | R Documentation |
Calculates the density of observations x
for state j
given the parameters in model
. This is used for
a Poisson emission distribution of a HMM or HSMM and is a suitable prototype for user's to make their own custom distributions.
dpois.hsmm(x, j, model)
x |
Observed value |
j |
State |
model |
A |
This is used by hmm
and hsmm
to calculate densities for use in the E-step of the EM algorithm.
It can also be used as a template for users wishing to building their own emission distributions
A vector of probability densities.
Jared O'Connell jaredoconnell@gmail.com
J<-3 initial <- rep(1/J,J) P <- matrix(c(.8,.5,.1,0.05,.2,.5,.15,.3,.4),nrow=J) b <- list(lambda=c(1,3,6)) model <- hmmspec(init=initial, trans=P, parms.emission=b,dens.emission=dpois.hsmm) model train <- simulate(model, nsim=300, seed=1234, rand.emis=rpois.hsmm) plot(train,xlim=c(0,100)) h1 = hmmfit(train,model,mstep=mstep.pois)