F2009 {nadiv}R Documentation

Pedigree, adapted from Fikse (2009)

Description

An example pedigree with genetic groups and fuzzy classification of genetic groups.

Usage

F2009

Format

An object of class data.frame with 16 rows and 11 columns.

Details

A data.frame with 16 observations on the following 11 variables:

id

a factor with levels indicating the unique individuals (including phantom parents) and genetic groups

dam

a factor of observed maternal identities

sire

a factor vector of observed paternal identities

damGG

a factor of maternal identities with genetic groups inserted instead of NA

sireGG

a factor of paternal identities with genetic groups inserted instead of NA

phantomDam

a factor of maternal identities with phantom parents inserted instead of NA

phantomSire

a factor of paternal identities with phantom parents inserted instead of NA

group

a factor of genetic groups to which each phantom parent belongs

g1

a numeric vector with probabilities of group g1 membership for each phantom parent

g2

a numeric vector with probabilities of group g2 membership for each phantom parent

g3

a numeric vector with probabilities of group g3 membership for each phantom parent

Source

Fikse, F. 2009. Fuzzy classification of phantom parent groups in an animal model. Genetics Selection Evolution 41:42.

Examples

  data(F2009)
  str(F2009)

[Package nadiv version 2.16.0.0 Index]