data.fasta.pony {phyclust} | R Documentation

## Great Pony 625 EIAV rev Dataset in the Fasta Format

### Description

Great pony 625 EIAV dataset is published by Baccam, P., et al. (2003), and they are also available on NCBI database. This is a follow-up study of `Data Pony 618`.

### Format

A text file in fasta format is stored in the data subdirectory.

### Details

EIAV rev dataset contains 62 nucleotide sequences and 406 sites.

### Author(s)

Baccam, P., et al. (2003).

### References

Phylogenetic Clustering Website: https://snoweye.github.io/phyclust/

Baccam, P., et al. (2003) “Subpopulations of Equine Infectious Anemia Virus Rev Coexist In Vivo and Differ in Phenotype”, Journal of Virology, 77, 12122-12131.

### See Also

`read.phylip`.

### Examples

    ## Not run:
    library(phyclust, quiet = TRUE)

    data.path <- paste(.libPaths()[1], "/phyclust/data/pony625.fas", sep = "")
    # edit(file = data.path)
    my.pony.625 <- read.fasta(data.path)
    str(my.pony.625)

    ## End(Not run)

[Package phyclust version 0.1-25 Index]