data.phylip.pony {phyclust} | R Documentation

## Great Pony 524 EIAV rev Dataset in the phylip Format

### Description

Great pony 524 EIAV dataset is published by Baccam, P., et al. (2003), and they are also available on NCBI database. There is a follow-up study, `Data Pony 625`.

### Format

A text file in phylip format is stored in the data subdirectory.

### Details

EIAV rev dataset contains 146 nucleotide sequences and 405 sites.

### Author(s)

Belshan, M., et al. (2001).

### References

Phylogenetic Clustering Website: https://snoweye.github.io/phyclust/

Belshan, M., et al. (2001) “Genetic and Biological Variation in Equine Infectious Anemia Virus Rev Correlates with Variable Stages of Clinical Disease in an Experimentally Infected Pony”, Virology, 279, 185-200.

### See Also

`read.fasta`.

### Examples

    ## Not run:
    library(phyclust, quiet = TRUE)

    data.path <- paste(.libPaths()[1], "/phyclust/data/pony524.phy", sep = "")
    # edit(file = data.path)
    my.pony.524 <- read.phylip(data.path)
    str(my.pony.524)

    ## End(Not run)

[Package phyclust version 0.1-25 Index]