plot {pomp} | R Documentation

## Plotting

### Description

Diagnostic plots.

### Usage

    ## S4 method for signature 'pomp_plottable'
    plot(x, variables, panel = lines, nc = NULL,
      yax.flip = FALSE, mar = c(0, 5.1, 0, if (yax.flip) 5.1 else 2.1),
      oma = c(6, 0, 5, 0), axes = TRUE, ...)

    ## S4 method for signature 'Pmcmc'
    plot(x, ..., pars)

    ## S4 method for signature 'Abc'
    plot(x, ..., pars, scatter = FALSE)

    ## S4 method for signature 'Mif2'
    plot(x, y, ...)

    ## S4 method for signature 'probed_pomp'
    plot(x, y, ...)

    ## S4 method for signature 'spectd_pomp'
    plot(x, ..., max.plots.per.page = 4,
      plot.data = TRUE, quantiles = c(0.025, 0.25, 0.5, 0.75, 0.975),
      quantile.styles = list(lwd = 1, lty = 1, col = "gray70"),
      data.styles = list(lwd = 2, lty = 2, col = "black"))

    ## S4 method for signature 'bsmcd_pomp'
    plot(x, pars, thin, ...)

    ## S4 method for signature 'probe_match_objfun'
    plot(x, y, ...)

    ## S4 method for signature 'spect_match_objfun'
    plot(x, y, ...)

### Arguments

`x` | the object to plot
`variables` | optional character; names of variables to be displayed
`panel` | function of prototype `panel(x, col, bg, pch, type, ...)` which gives the action to be carried out in each panel of the display.
`nc` | the number of columns to use. Defaults to 1 for up to 4 series, otherwise to 2.
`yax.flip` | logical; if TRUE, the y-axis (ticks and numbering) should flip from side 2 (left) to 4 (right) from series to series.
`mar, oma` | the `par` `mar` and `oma` settings. Modify with care!
`axes` | logical; indicates if x- and y- axes should be drawn
`...` | ignored or passed to low-level plotting functions
`pars` | names of parameters.
`scatter` | logical; if `FALSE`, traces of the parameters named in `pars` will be plotted against ABC iteration number. If `TRUE`, the traces will be displayed or as a scatterplot.
`y` | ignored
`max.plots.per.page` | positive integer; maximum number of plots on a page
`plot.data` | logical; should the data spectrum be included?
`quantiles` | numeric; quantiles to display
`quantile.styles` | list; plot styles to use for quantiles
`data.styles` | list; plot styles to use for data
`thin` | integer; when the number of samples is very large, it can be helpful to plot a random subsample: `thin` specifies the size of this subsample.

[Package pomp version 2.3 Index]