popkin-package |
A package for estimating kinship and FST under arbitrary population structure |
fst |
Calculate FST from a population-level kinship matrix or vector of inbreeding coefficients |
inbr |
Extract inbreeding coefficients from a kinship matrix |
inbr_diag |
Replace kinship diagonal with inbreeding coefficients |
mean_kinship |
Calculate the weighted mean kinship |
n_eff |
Calculates the effective sample size of the data |
plot_popkin |
Visualize one or more kinship matrices |
popkin |
Estimate kinship from a genotype matrix and subpopulation assignments |
pwfst |
Estimate the individual-level pairwise FST matrix |
rescale_popkin |
Rescale kinship matrix to set a given kinship value to zero. |
validate_kinship |
Validate a kinship matrix |
weights_subpops |
Get weights for individuals that balance subpopulations |
_PACKAGE |
A package for estimating kinship and FST under arbitrary population structure |