inbrDiag {popkin}R Documentation

Deprecated functions in package popkin.

Description

The functions listed below are deprecated and will be defunct in the near future. When possible, alternative functions with similar functionality are also mentioned. Help pages for deprecated functions are available at help("-deprecated").

Usage

inbrDiag(kinship)

neff(kinship, max = TRUE, w = NULL, retW = TRUE, nonneg = TRUE,
  algo = c("gradient", "newton", "heuristic"), tol = 1e-10)

plotPopkin(x, colCont, coln = 100, xMar = NULL, marPad = 0.2,
  diagLine = FALSE, panelLetters = toupper(letters),
  panelLetterCex = 1.5, ylabAdj = NA, ylabLine = 0,
  addLayout = TRUE, nr = 1, legTitle = "Kinship", legMar = NULL,
  nPretty = 5, showNames = FALSE, namesCex = 1, namesLine = NA,
  labsCex = 1, labsLas = 0, labsLine = 0, labsSkipLines = FALSE,
  labsLwd = 1, labsCol = "black", labsDoTicks = FALSE,
  labsDoText = TRUE, labsEven = FALSE, ...)

rescalePopkin(kinship, subpops = NULL, min_kinship = NA)

weightsSubpops(subpops)

inbrDiag

For inbrDiag, use inbr_diag.

neff

For neff, use n_eff.

plotPopkin

For plotPopkin, use plot_popkin. Several argument names have also changed!

rescalePopkin

For rescalePopkin, use rescale_popkin.

weightsSubpops

For weightsSubpops, use weights_subpops.


[Package popkin version 1.2.2 Index]