MVP.Report.Density {rMVP} | R Documentation |
SNP Density
MVP.Report.Density(Pmap, col = c("darkgreen", "yellow", "red"), dpi = 300, outpath = getwd(), memo = "MVP", bin.size = 1e+06, bin.max = NULL, file.type = "jpg", file.output = TRUE, verbose = TRUE)
Pmap |
P value Map |
col |
The color vector |
dpi |
Number. Dots per inch for .jpg and .tiff files |
outpath |
Only when file.output = TRUE, determines the path of the output file |
memo |
Character. A text marker on output files |
bin.size |
the window size for counting SNP number |
bin.max |
maximum SNP number, for winows, which has more SNPs than bin.max, will be painted in same color |
file.type |
format of output figure |
file.output |
Whether to output the file |
verbose |
whether to print detail. |
Output file: <memo>.SNP_Density.<type>
data(pig60K, package = "rMVP") MVP.Report.Density(pig60K, file.output=FALSE)