MVP.Data.Bfile2MVP {rMVP} | R Documentation |
MVP.Data.Bfile2MVP: To transform plink binary data to MVP package Author: Haohao Zhang Build date: Sep 12, 2018
MVP.Data.Bfile2MVP(bfile, out = "mvp", maxLine = 10000, priority = "speed", type.geno = "char", threads = 0, verbose = TRUE)
bfile |
Genotype in binary format (.bed, .bim, .fam) |
out |
the name of output file |
maxLine |
the max number of line to write to big matrix for each loop |
priority |
'memory' or 'speed' |
type.geno |
the type of genotype elements |
threads |
number of thread for transforming |
verbose |
whether to print the reminder |
number of individuals and markers. Output files: genotype.desc, genotype.bin: genotype file in bigmemory format phenotype.phe: ordered phenotype file, same taxa order with genotype file map.map: SNP information
bfilePath <- system.file("extdata", "02_bfile", "mvp", package = "rMVP") MVP.Data.Bfile2MVP(bfilePath, file.path(tempdir(), "rMVP.test"))