Plasmids {SDDE} | R Documentation

## An original and an augmented real genomic networks

### Description

These networks include 152 archaea, 217 eubacteria with the addition of 3 479 plasmids to illustrate the application of the SDDE package

### Usage

    data(Plasmids)

### Format

A data frame with the following 2 variables:

g1

  An original igraph network

g2

  An augmented igraph network

### Examples

    ## Not run:
    	data(Plasmids)
    	info_network(g1,g2)

    ## End(Not run)
    ## Network characteristics:
    ## Total of new nodes in network Y: 3522
    ## Number of edges in network Y: 187848
    ## Number of nodes in network Y: 3848
    ## Number of nodes in network X: 326
    ## Total of pathways to investigate: 52975
    ## Clustering coefficient network Y: 0.5591526
    ## Clustering coefficient network X: 0.8643119
    ## Average degree + std in network Y: 97.6341 + 119.6407
    ## Average degree + std in network X: 10.45399 + 8.502816
    ## Average path length in network Y: 2.903052
    ## Average path length in network X: 4.915441
    ## Number of clusters in network Y: 74
    ## Number of clusters in network X: 22
    ## Average cluster size + std in network Y: 52 + 417.644
    ## Average cluster size + std in network X: 14.81818 + 25.1711
    ## Nodes distribution in network Y (first row taxa, second row count):
    ##   archaea eubacteria    plasmid
    ##       152        217       3479

[Package SDDE version 1.0.1 Index]