Eukaryote_photo {SDDE} | R Documentation

## An original and an augmented real genomic networks

### Description

Those networks are composed of 145 archaea, 181 eubacteria with the addition of 19 photosynthetic eukaryotes to illustrate the functions of this package.

### Usage

    data(Eukaryote_photo)

### Format

A data frame with the following 2 variables:

g1

  An original igraph network

g2

  An augmented igraph network

### Examples

    ## Not run:
    data(Eukaryote_photo)
    info_network(g1,g2)

    ## End(Not run)
    ## Network characteristics:
    ## Total of new nodes in network Y: 19
    ## Number of edges in network Y: 2014
    ## Number of nodes in network Y: 345
    ## Number of nodes in network X: 326
    ## Total of pathways to investigate: 52975
    ## Clustering coefficient network Y: 0.866758
    ## Clustering coefficient network X: 0.8643119
    ## Average degree + std in network Y: 11.67536 + 9.600091
    ## Average degree + std in network X: 10.45399 + 8.502816
    ## Average path length in network Y: 5.972801
    ## Average path length in network X: 4.915441
    ## Number of clusters in network Y: 21
    ## Number of clusters in network X: 22
    ## Average cluster size + std in network Y: 16.42857 + 32.51857
    ## Average cluster size + std in network X: 14.81818 + 25.1711
    ## Nodes distribution in network Y (first row taxa, second row count):
    ##        archaea      eubacteria eukaryote_photo
    ##            145             181              19

[Package SDDE version 1.0.1 Index]