Soft-Discretization-Based Bayesian Network Inference


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Documentation for package ‘sdnet’ version 2.4.1

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C D I S T

sdnet-package sdnet: Soft Discretization-based Bayesian Network Inference

-- C --

catNetwork Class "catNetwork"
catNetwork-class Class "catNetwork"
catNetworkDistance Class "catNetworkDistance"
catNetworkDistance-class Class "catNetworkDistance"
catNetworkEvaluate Classes "catNetworkEvaluate" and "dagEvaluate"
catNetworkEvaluate-class Classes "catNetworkEvaluate" and "dagEvaluate"
cnCatnetFromBif Categorical Network from Simple Interaction File (SIF) and Bayesian Networks Interchange Format (BIF)
cnCatnetFromBif-method Categorical Network from Simple Interaction File (SIF) and Bayesian Networks Interchange Format (BIF)
cnCatnetFromEdges catNetwork from Edges
cnCatnetFromEdges-method catNetwork from Edges
cnCatnetFromSif Categorical Network from Simple Interaction File (SIF) and Bayesian Networks Interchange Format (BIF)
cnCatnetFromSif-method Categorical Network from Simple Interaction File (SIF) and Bayesian Networks Interchange Format (BIF)
cnCatnetFromXdsl Categorical Network from Simple Interaction File (SIF) and Bayesian Networks Interchange Format (BIF)
cnCatnetFromXdsl-method Categorical Network from Simple Interaction File (SIF) and Bayesian Networks Interchange Format (BIF)
cnCluster Network Clustering
cnCluster-method Network Clustering
cnClusterMI Network Clustering
cnClusterSep Network Clustering
cnClusterSep-method Network Clustering
cnCompare Network Comparison
cnCompare-method Network Comparison
cnComplexity Network Complexity
cnComplexity-method Network Complexity
cnCondProb Probability Calculations
cnCondProb-method Probability Calculations
cnDiscretize Data Categorization
cnDot Network Description File
cnDot-method Network Description File
cnEdgeDistanceKL Pairwise Node Entropy
cnEdgeDistancePearson Pairwise Node Entropy
cnEdges Network Edges
cnEdges-method Network Edges
cnEntropy Pairwise Node Entropy
cnEntropyOrder Pairwise Node Entropy
cnFind Find Network by Complexity
cnFind-method Find Network by Complexity
cnFindAIC Find Network by AIC
cnFindAIC-method Find Network by AIC
cnFindBIC Find Network by BIC
cnFindBIC-method Find Network by BIC
cnFindKL Find Network by Complexity
cnFindKL-method Find Network by Complexity
cnJointProb Probability Calculations
cnJointProb-method Probability Calculations
cnKLComplexity Network Complexity
cnKLComplexity-method Network Complexity
cnLoglik Sample Log-likelihood
cnLoglik-method Sample Log-likelihood
cnMatEdges Network Edge Matrix
cnMatEdges-method Network Edge Matrix
cnMatParents Network Parent Matrix
cnMatParents-method Network Parent Matrix
cnNew New catNetwork
cnNodeLoglik Node Log-likelihood
cnNodeLoglik-method Node Log-likelihood
cnNodeMarginalProb Probability Calculations
cnNodeMarginalProb-method Probability Calculations
cnNodes Netwok Nodes
cnNodes-method Netwok Nodes
cnNodeSampleLoglik Node Log-likelihood
cnNodeSampleProb Node Log-likelihood
cnNumNodes Network Size
cnNumNodes-method Network Size
cnOrder Network Node Order
cnOrder-method Network Node Order
cnParents Network Parent Structure
cnParents-method Network Parent Structure
cnParHist Parenthood Histogram
cnParHist-method Parenthood Histogram
cnPearsonTest Goodness of Fit Test
cnPearsonTest-method Goodness of Fit Test
cnPlot Plot Network
cnPlot-method Plot Network
cnPlotProb Conditional Probability Structure
cnPlotProb-method Conditional Probability Structure
cnPredict Prediction
cnPredict-method Prediction
cnProb Conditional Probability Structure
cnProb-method Conditional Probability Structure
cnRandomCatnet Random Network
cnReorderNodes Reorder Network Nodes
cnReorderNodes-method Reorder Network Nodes
cnSamples Samples from Network
cnSamples-method Samples from Network
cnSearchDags Network Search for Given Node Order
cnSearchHist Parent Histogram Matrix
cnSearchOrder Network Search for Given Node Order
cnSetProb Set Probability from Data
cnSetProb-method Set Probability from Data
cnSetSeed Random Generator Seed
cnSubNetwork Sub-Network
cnSubNetwork-method Sub-Network
CPDAG Class CPDAG
CPDAG-class Class CPDAG

-- D --

dag2cpdag Complete Network Representation
dag2cpdag-method Complete Network Representation
dagEvaluate Classes "catNetworkEvaluate" and "dagEvaluate"
dagEvaluate-class Classes "catNetworkEvaluate" and "dagEvaluate"

-- I --

isDAG Check Direct Acyclic Graph (DAG) Condition

-- S --

sdnet sdnet: Soft Discretization-based Bayesian Network Inference
sdnEvaluate Naive Classifier of Gene Expression Profiles
sdnLearn Naive Classifier of Gene Expression Profiles
sdnPredict Naive Classifier of Gene Expression Profiles

-- T --

tyr1 Tyroid cancer data
tyr2 Tyroid cancer data