plot.sensitivity {sensitivityPStrat} | R Documentation |
Functions used to plot the objects created by the sensitivityPStrat family of functions.
## S3 method for class 'sensitivity.1.0d' plot(x, xlim, ylim, xlab = expression(beta), ylab = "ACE", display = c("analytic", "bootstrap"), ci.select = 1, col = "black", line.col = col, point.col = col, analytic.col = "red", analytic.line.col = analytic.col, analytic.point.col = analytic.col, bootstrap.col = "green", bootstrap.line.col = bootstrap.col, bootstrap.point.col = bootstrap.col, panel.last = NULL, type = "l", ...) ## S3 method for class 'sensitivity.2.0d' plot(x, xlim, ylim, xlab = expression(beta[0]), ylab = expression(beta[1]), display = c("analytic", "bootstrap"), col = c(gray(.9), gray(1), gray(.8)), panel.last = NULL, ...) ## S3 method for class 'sensitivity.1.1d' plot(x, xlim, ylim, xlab = expression(beta), ylab = "SCE", t.point, display = c("analytic", "bootstrap"), col = "black", line.col = col, point.col = col, analytic.col = "red", analytic.line.col = analytic.col, analytic.point.col = analytic.col, bootstrap.col = "green", bootstrap.line.col = bootstrap.col, bootstrap.point.col = bootstrap.col, panel.last = NULL, type = "l", ...)
x |
sensitivity object |
t.point |
the time point at which data to create the plot. |
display |
character vector. Controls which confidence interval to use plot. |
ci.select |
integer vector or all. Selects the confidence interval to be ploted. If set to all then all confidence intervals are plotted. Default value is 1. |
line.col |
the color all the lines should be. |
point.col |
the color all the infinity points should be. |
analytic.col |
vector; the color of all of the analytic confidence interval markings. Value are recycled if more confidence intervals are selected then given color values. |
analytic.line.col |
vector;the color of all of the analytic confidence interval lines. Value are recycled if more confidence intervals are selected then given color values. |
analytic.point.col |
vector; the color of all of the analytic confidence interval infinity points. Value are recycled if more confidence intervals are selected then given color values. |
bootstrap.col |
vector; the color of all of the bootstrap confidence interval markings. Value are recycled if more confidence intervals are selected then given color values. |
bootstrap.line.col |
vector; the color of all of the bootstrap confidence interval lines. Value are recycled if more confidence intervals are selected then given color values. |
bootstrap.point.col |
vector; the color of all of the bootstrap confidence interval infinity points. Value are recycled if more confidence intervals are selected then given color values. |
xlim, ylim, xlab, ylab, col, panel.last, type |
see |
... |
arguments passed to |
Charles Dupont
Department of Biostatistics
Vanderbilt University
data(vaccine.trial) ansJR<-with(vaccine.trial, sensitivityJR(z=treatment,s=hiv.outcome,y=logVL, beta0=c(-1,-.5,-.25,0,.25,.5,1), beta1=c(-1,-.5,-.25,0,.25,.5,1), phi=c(0.95,0.90), selection="infected", groupings=c("placebo","vaccine"), N.boot=50) ) plot(ansJR) ans<-with(vaccine.trial, sensitivityGBH(z=treatment,s=hiv.outcome,y=logVL, beta=c(-Inf,-1,0.75,-0.5,-0.25,0,.25,.5,.75,1,Inf), selection="infected", groupings=c("placebo","vaccine"), empty.principal.stratum=c("not infected","infected"), ci.method="bootstrap", ci=c(0.95, 0.9, 0.9), ci.type=c("twoSided", "upper", "lower"), custom.FUN=function(mu0, mu1, ...) mu1 - mu0, N.boot=50, method=c("ACE", "T1", "T2"), upperTest=TRUE, lowerTest=TRUE, twoSidedTest=TRUE) ) plot(ans, ci.select="all", bootstrap.col=c("red","green","blue"))