annotatePlain {seqminer} | R Documentation |
Annotate a plain text file
annotatePlain(inFile, outFile, params)
inFile |
input file name |
outFile |
output file name |
params |
parameters |
0 if succeed
param <- list(reference = system.file("tabanno/test.fa", package = "seqminer"), geneFile = system.file("tabanno/test.gene.txt", package = "seqminer"), inputFormat = "plain") param <- makeAnnotationParameter(param) inFile <- system.file("tabanno/input.test.plain.txt", package = "seqminer") outFile <- paste0(getwd(), "/", "out.annotated.txt") annotatePlain(inFile, outFile, param)