annotateVcf {seqminer} | R Documentation |
Annotate a VCF file
annotateVcf(inVcf, outVcf, params)
inVcf |
input VCF file name |
outVcf |
output VCF file name |
params |
parameters |
0 if succeed
param <- list(reference = system.file("tabanno/test.fa", package = "seqminer"), geneFile = system.file("tabanno/test.gene.txt", package = "seqminer")) param <- makeAnnotationParameter(param) inVcf <- system.file("tabanno/input.test.vcf", package = "seqminer") outVcf <- paste0(getwd(), "/", "out.vcf") annotateVcf (inVcf, outVcf, param)