Pedigree Inference from SNPs


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Documentation for package ‘sequoia’ version 1.3.3

Help Pages

CheckGeno check GenoM
DyadCompare Compare dyads
EstConf Estimate confidence probability
FindFamilies Assign family IDs
GenoConvert Convert genotype data
GetMaybeRel Find putative relatives
GetRelCat Pairwise relationship
Inherit Inheritance patterns
LHConvert Extract sex and birthyear from PLINK file
LH_HSg5 Example life history file
MakeAgePrior Age priors
MkGenoErrors Simulate genotyping errors
PedCompare Compare two Pedigrees
PedStripFID backtransform IDs
Ped_HSg5 Example pedigree
PlotAgePrior Plot age priors
sequoia Pedigree Reconstruction
SimGeno Simulated genotypes
SimGeno_example Example genotype file
SnpStats SNP summary statistics
SummarySeq Summarise sequoia output or pedigree
writeColumns write data to a file column-wise
writeSeq write sequoia output to excel or text files