writeSeq {sequoia} | R Documentation |
The various list elements returned by sequoia
are each
written to text files in the specified folder, or to separate sheets in a
single excel file (requires library xlsx).
writeSeq(SeqList, GenoM = NULL, PedComp = NULL, OutFormat = "txt", folder = "Sequoia-OUT", file = "Sequoia-OUT.xlsx", quiet = FALSE)
SeqList |
the list returned by |
GenoM |
the matrix with genetic data (optional). Ignored if OutFormat='xls', as the resulting file could become too large for excel. |
PedComp |
a list with results from |
OutFormat |
'xls' or 'txt'. |
folder |
the directory where the text files will be written; will be created if it does not already exists. Relative to the current working directory, or NULL for current working directory. Ignored if OutFormat='xls'. |
file |
the name of the excel file to write to, ignored if OutFormat='txt'. |
quiet |
suppress messages. |
The text files can be used as input for the stand-alone Fortran
version of #' sequoia, e.g. when the genotype data is too large for R.
See vignette('sequoia')
for further details.
## Not run: writeSeq(SeqList, OutFormat="xls", file="MyFile.xlsx") # add additional sheets to the excel file: library(xlsx) write.xlsx(MyData, file = "MyFile.xlsx", sheetName="ExtraData", col.names=TRUE, row.names=FALSE, append=TRUE, showNA=FALSE) ## End(Not run)