transmissionTree {SMITIDvisu} | R Documentation |
Draw a transmission tree over the time. Time use timestamp or Date in ISO format ("
transmissionTree(nodes, edges, nodes.color = NULL, width = NULL, height = NULL, elementId = NULL)
nodes |
a data.frame that reprensent hosts status in time with ID, status and time in columns |
edges |
a data.frame that reprensent tramsmission link between hosts (pathogens) with ID, source, target and time in columns |
nodes.color |
a list of color for nodes status "status"="color" |
width |
numeric width for the area in pixels. |
height |
numeric hieght for the area in pixels. |
elementId |
the element ID where is draw |
library(SMITIDvisu) data(transmissiontree) tt <- transmissionTree(tt.nodes,tt.edges, nodes.color = list("default"="black","Inf"="red")) ## export as standalone html file htmlwidgets::saveWidget(tt, "transTree.html") browseURL("transTree.html")