B C D E F G I L M N P Q R S T U
SpatioTemporal-package | Spatio-Temporal Modelling |
block.mult | Deprecated functions, use replacements! |
blockMult | Multiplication of Block Diagonal Matrix and Vector |
boxplot.estCVSTmodel | Boxplots for 'estCVSTmodel' object |
boxplot.SVDcv | Plot and Boxplot cross-validation statistics for 'SVDcv' object |
c.STmodel | Combine Several STmodel/STdata Objects |
calc.F.times.X | Deprecated functions, use replacements! |
calc.FX | Compute Matrix Product Bewteen Temporal Trends and a LUR components |
calc.FXtF2 | Compute Quadratic Form Bewteen Temporal Trends and Sigma B |
calc.iS.X | Matrix Multiplication with Block Matrices |
calc.mu.B | Matrix Multiplication with Block Matrices |
calc.smooth.trends | Deprecated functions, use replacements! |
calc.tF.mat.F | Deprecated functions, use replacements! |
calc.tF.times.mat | Deprecated functions, use replacements! |
calc.tFX | Compute Matrix Product Bewteen Temporal Trends and a Matrix |
calc.tFXF | Compute Quadratic Form Bewteen Temporal Trends and Sigma nu |
calc.X.iS.X | Matrix Multiplication with Block Matrices |
calcSmoothTrends | Smooth Basis Functions for a STdata Object |
coef.estCVSTmodel | Returns estimated parameters for each CV-group. |
coef.estimateSTmodel | Returns estimated parameters (and uncertaintes) |
combineMesaData | Deprecated functions, use replacements! |
compute.ltaCV | Deprecated functions, use replacements! |
computeLTA | Computes the Long Term Average for Each Sites. |
cond.expectation | Deprecated functions, use replacements! |
construct.LUR.basis | Deprecated functions, use replacements! |
construct.ST.basis | Deprecated functions, use replacements! |
convertCharToDate | Convert Character to Dates |
create.data.matrix | Deprecated functions, use replacements! |
create.data.model | Deprecated functions, use replacements! |
createCV | Define Cross-Validation Groups |
createDataMatrix | Create a Data Matrix |
createLUR | Add Covariate Fields to 'STdata' Object. |
createST | Add Covariate Fields to 'STdata' Object. |
createSTdata | Construct STdata Object |
createSTmodel | Construct STmodel Object |
crossDist | Computed the Euclidian Distance Matrix |
CVbasics | Deprecated functions, use replacements! |
CVresiduals.qqnorm | Deprecated functions, use replacements! |
CVresiduals.scatter | Deprecated functions, use replacements! |
default.LUR.list | Deprecated functions, use replacements! |
default.ST.list | Deprecated functions, use replacements! |
defaultList | Add Default Elements to Incomplete list |
density.mcmcSTmodel | Kernel Density Estimation for an 'mcmcSTmodel' Object |
detrend.data | Deprecated functions, use replacements! |
detrendSTdata | Removes Temporal Trend from Observations in a 'STdata' Object |
dot.prod | Deprecated functions, use replacements! |
dotProd | Computes Inner Product and Squared 2-norm |
drop.observations | Deprecated functions, use replacements! |
dropObservations | Drop Observations from a STmodel |
est.cv.mesa | Example of 'estCVSTmodel' and 'predCVSTmodel' structures |
est.mesa.model | Examples of 'estimateSTmodel' structure |
estimate | Estimation of the Spatio-Temporal Model |
estimate.STmodel | Estimation of the Spatio-Temporal Model |
estimateBetaFields | Regression Estimates of beta-Fields |
estimateCV | Cross-Validated Estimation and Prediction |
estimateCV.STmodel | Cross-Validated Estimation and Prediction |
evalCovFuns | Compute Covariance Function |
expandF | Expand F |
fit.mesa.model | Deprecated functions, use replacements! |
gen.gradient | Deprecated functions, use replacements! |
gen.hessian | Deprecated functions, use replacements! |
genGradient | Compute Finite Difference Gradient and Hessians. |
genHessian | Compute Finite Difference Gradient and Hessians. |
get.params | Deprecated functions, use replacements! |
invCholBlock | Computations for Block Diagonal Matrices |
loglike | Deprecated functions, use replacements! |
loglike.dim | Deprecated functions, use replacements! |
loglike.grad | Deprecated functions, use replacements! |
loglike.hessian | Deprecated functions, use replacements! |
loglike.naive | Deprecated functions, use replacements! |
loglike.naive.grad | Deprecated functions, use replacements! |
loglike.naive.hessian | Deprecated functions, use replacements! |
loglike.var.names | Deprecated functions, use replacements! |
loglikeST | Compute the Log-likelihood for the Spatio-Temporal Model |
loglikeSTdim | Dimensions of the STmodel Structure |
loglikeSTgetPars | Extract Parameters from a Vector |
loglikeSTGrad | Compute Gradient and Hessian for the Log-likelihood |
loglikeSTHessian | Compute Gradient and Hessian for the Log-likelihood |
loglikeSTnaive | Compute the Log-likelihood for the Spatio-Temporal Model |
loglikeSTnaiveGrad | Compute Gradient and Hessian for the Log-likelihood |
loglikeSTnaiveHessian | Compute Gradient and Hessian for the Log-likelihood |
loglikeSTnames | Create Names for Log-likelihood Parameters for STmodel objects |
make.sigma.B | Deprecated functions, use replacements! |
make.sigma.B.full | Deprecated functions, use replacements! |
make.sigma.nu | Deprecated functions, use replacements! |
make.sigma.nu.cross.cov | Deprecated functions, use replacements! |
makeCholBlock | Computations for Block Diagonal Matrices |
makeSigmaB | Create Block Covariance Matrix (Equal Block Sizes) |
makeSigmaNu | Create Block Covariance Matrix (Unequal Block Sizes) |
MCMC | MCMC Inference of Parameters in the Spatio-Temporal Model |
MCMC.mesa.model | Example of a 'mcmcSTmodel' structure |
MCMC.STmodel | MCMC Inference of Parameters in the Spatio-Temporal Model |
mesa.data.raw | Data used in the examples |
mesa.model | Example of a 'STmodel' structure |
namesCovFuns | Available covariance functions |
norm2 | Computes Inner Product and Squared 2-norm |
parsCovFuns | Parameter Names for Covariance Function(s) |
plot.density.mcmcSTmodel | Plots for an 'density.mcmcSTmodel' object |
plot.mcmcSTmodel | Plots for an 'mcmcSTmodel' object |
plot.predCVSTmodel | Plots for 'predictSTmodel' and 'predCVSTmodel' Objects |
plot.predictSTmodel | Plots for 'predictSTmodel' and 'predCVSTmodel' Objects |
plot.STdata | Different Plots for 'STdata'/'STmodel' object |
plot.STmodel | Different Plots for 'STdata'/'STmodel' object |
plot.SVDcv | Plot and Boxplot cross-validation statistics for 'SVDcv' object |
plotCV | Deprecated functions, use replacements! |
plotMesaData | Deprecated functions, use replacements! |
plotMonitoringLoc | Deprecated functions, use replacements! |
plotPrediction | Deprecated functions, use replacements! |
pred.cv.mesa | Example of 'estCVSTmodel' and 'predCVSTmodel' structures |
pred.mesa.model | Example of a 'predictSTmodel' structure |
predict.STmodel | Computes Conditional Expectation at Unobserved Locations |
predictCV | Cross-Validated Estimation and Prediction |
predictCV.STmodel | Cross-Validated Estimation and Prediction |
predictNaive | Naive Temporal Predictions |
print.estCVSTmodel | Print details for 'estCVSTmodel' object |
print.estimateSTmodel | Print details for 'estimateSTmodel' object |
print.mcmcSTmodel | Print details for 'mcmcSTmodel' object |
print.predCVSTmodel | Print details for 'predCVSTmodel' object |
print.predictSTmodel | Print details for 'predictSTmodel' object |
print.STdata | Print details for 'STdata' object |
print.STmodel | Print details for 'STmodel' object |
print.summary.estCVSTmodel | Print details for 'summary.estCVSTmodel' object |
print.summary.mcmcSTmodel | Print details for 'summary.mcmcSTmodel' object |
print.summary.predCVSTmodel | Print details for 'summary.predCVSTmodel' object |
print.summary.STdata | Print details for 'summary.STdata' object |
print.summary.STmodel | Print details for 'summary.STmodel' object |
print.SVDcv | Print details for 'SVDcv' object |
printMesaDataNbrObs | Deprecated functions, use replacements! |
processLocation | Internal Function that Extracts Locations |
processLUR | Internal Function that do Covariate Selection |
processST | Internal Function that do Covariate Selection |
qqnorm.predCVSTmodel | QQ-norm for 'STdata'/'STmodel'/'predCVSTmodel' objects |
qqnorm.STdata | QQ-norm for 'STdata'/'STmodel'/'predCVSTmodel' objects |
qqnorm.STmodel | QQ-norm for 'STdata'/'STmodel'/'predCVSTmodel' objects |
remove.ST.mean | Deprecated functions, use replacements! |
removeSTcovarMean | Mean-Centre the Spatio-Temporal Covariate |
run.MCMC | Deprecated functions, use replacements! |
scatterPlot | Scatter plot |
scatterPlot.predCVSTmodel | scatterPlot for 'STdata'/'STmodel'/'predCVSTmodel' objects |
scatterPlot.STdata | scatterPlot for 'STdata'/'STmodel'/'predCVSTmodel' objects |
scatterPlot.STmodel | scatterPlot for 'STdata'/'STmodel'/'predCVSTmodel' objects |
setupSTdataset | Deprecated functions, use replacements! |
simulate.STmodel | Simulate Data from the Spatio-Temporal Model |
simulateMesaData | Deprecated functions, use replacements! |
solveTriBlock | Computations for Block Diagonal Matrices |
SpatioTemporal | Spatio-Temporal Modelling |
stCheckClass | Test if an object belongs to given class(es). |
stCheckCovars | Check a data.frame of Covariates |
stCheckFields | Test if fields exist in an object. |
stCheckObs | Check an 'obs' data.frame. |
stCheckSTcovars | Check an Array/List of Spatio-Temporal Covariates |
sumLog | Sum the Logarithm of (Diagonal) Elements |
sumLogDiag | Sum the Logarithm of (Diagonal) Elements |
summary.estCVSTmodel | Computes summary details for 'estCVSTmodel' object |
summary.mcmcSTmodel | Computes summary details for 'mcmcSTmodel' object |
summary.predCVSTmodel | Computes summary details for 'predCVSTmodel' object |
summary.STdata | Computes summary details for 'STdata' object |
summary.STmodel | Computes summary details for 'STmodel' object |
summary.SVDcv | Print details for 'SVDcv' object |
summaryStatsCV | Deprecated functions, use replacements! |
SVD.miss | Deprecated functions, use replacements! |
SVD.smooth | Deprecated functions, use replacements! |
SVD.smooth.cv | Deprecated functions, use replacements! |
SVDmiss | Missing Data SVD |
SVDsmooth | Smooth Basis Functions for Data Matrix with Missing Values |
SVDsmoothCV | Smooth Basis Functions for Data Matrix with Missing Values |
tstat | Deprecated functions, use replacements! |
updateCovf | Update Covariance Functions in 'STmodel' Objects |
updateSTdataTrend | Update Trend in 'STdata' or 'STmodel' Object |
updateTrend | Update Trend in 'STdata' or 'STmodel' Object |
updateTrend.STdata | Update Trend in 'STdata' or 'STmodel' Object |
updateTrend.STmodel | Update Trend in 'STdata' or 'STmodel' Object |