make.sigma.B {SpatioTemporal} | R Documentation

## Deprecated functions, use replacements!

### Description

Deprecated functions, use replacements!

### Usage

    make.sigma.B(...)

    make.sigma.B.full(...)

    make.sigma.nu(...)

    make.sigma.nu.cross.cov(...)

    calc.tF.times.mat(...)

    calc.F.times.X(...)

    calc.tF.mat.F(...)

    block.mult(...)

    dot.prod(...)

    SVD.miss(...)

    SVD.smooth(...)

    SVD.smooth.cv(...)

    calc.smooth.trends(...)

    setupSTdataset(...)

    printMesaDataNbrObs(...)

    plotMonitoringLoc(...)

    plotMesaData(...)

    create.data.matrix(...)

    remove.ST.mean(...)

    detrend.data(...)

    create.data.model(...)

    default.LUR.list(...)

    default.ST.list(...)

    construct.LUR.basis(...)

    construct.ST.basis(...)

    loglike.dim(...)

    loglike.var.names(...)

    get.params(...)

    loglike(...)

    loglike.naive(...)

    gen.gradient(...)

    gen.hessian(...)

    loglike.grad(...)

    loglike.hessian(...)

    loglike.naive.grad(...)

    loglike.naive.hessian(...)

    fit.mesa.model(...)

    cond.expectation(...)

    simulateMesaData(...)

    combineMesaData(...)

    drop.observations(...)

    plotPrediction(...)

    tstat(...)

    compute.ltaCV(...)

    CVbasics(...)

    summaryStatsCV(...)

    run.MCMC(...)

    plotCV(...)

    CVresiduals.qqnorm(...)

    CVresiduals.scatter(...)

### Arguments

`...` | Unused, for compability.

### Details

Functions have been rename/replaced as:

block.mult

  `blockMult`

calc.F.times.X

  `calc.FX`

calc.smooth.trends

  `calcSmoothTrends` and `updateTrend`

calc.tF.mat.F

  `calc.tFXF`

calc.tF.times.mat

  `calc.tFX`, see also `expandF`.

combineMesaData

  `c.STmodel`

compute.ltaCV

  `computeLTA`

cond.expectation

  `predict.STmodel`

construct.LUR.basis

  `createLUR`

construct.ST.basis

  `createST`

create.data.matrix

  `createDataMatrix`

create.data.model

  `createSTmodel`, see also `updateCovf` and `processLocation`.

CVbasics

  Included in `estimateCV.STmodel`.

CVresiduals.qqnorm

  `qqnorm.STdata`, `qqnorm.STmodel`, or `qqnorm.predCVSTmodel`

CVresiduals.scatter

  `scatterPlot.STdata`, `scatterPlot.STmodel`, or `scatterPlot.predCVSTmodel`

default.LUR.list

  `processLUR`

default.ST.list

  `processST`

detrend.data

  `detrendSTdata`

dot.prod

  `dotProd`

drop.observations

  `dropObservations`

fit.mesa.model

  `estimate.STmodel`

gen.gradient

  `genGradient`

gen.hessian

  `genHessian`

get.params

  `loglikeSTgetPars`

loglike

  `loglikeST`

loglike.dim

  `loglikeSTdim`

loglike.grad

  `loglikeSTGrad`

loglike.hessian

  `loglikeSTHessian`

loglike.naive

  `loglikeSTnaive`

loglike.naive.grad

  `loglikeSTnaiveGrad`

loglike.naive.hessian

  `loglikeSTnaiveHessian`

loglike.var.names

  `loglikeSTnames`

make.sigma.B

  `makeSigmaB`, see `parsCovFuns`, `namesCovFuns`, and `evalCovFuns` for new covariance specifications.

make.sigma.B.full

  `makeSigmaB` and `calc.FXtF2`

make.sigma.nu

  `makeSigmaNu`

make.sigma.nu.cross.cov

  `makeSigmaNu`

printMesaDataNbrObs

  `print.STdata`, `summary.STdata`, `print.STmodel`, and `summary.STmodel`

plotCV

  `plot.predCVSTmodel`

plotMesaData

  `plot.STdata` and `plot.STmodel`

plotMonitoringLoc

  `plot.STdata` and `plot.STmodel`

plotPrediction

  `plot.predictSTmodel`

remove.ST.mean

  `removeSTcovarMean`

run.MCMC

  `MCMC.STmodel`

setupSTdataset

  `createSTdata`

simulateMesaData

  `simulate.STmodel`

summaryStatsCV

  `summary.predCVSTmodel`

SVD.miss

  `SVDmiss`

SVD.smooth

  `SVDsmooth`

SVD.smooth.cv

  `SVDsmoothCV`, see also `plot.SVDcv` and `print.SVDcv`.

tstat

  Included in `predict.STmodel`

### Value

Does not return.

### Author(s)

Johan Lindstrom

[Package SpatioTemporal version 1.1.9.1 Index]