calc_summary_stats_trace {tracerer} | R Documentation |
Calculates the Effective Sample Sizes of one estimated variable's trace.
calc_summary_stats_trace(trace, sample_interval)
trace |
a numeric vector of values. Assumes the burn-in is removed. |
sample_interval |
the interval in timesteps between samples |
the effective sample sizes
Richèl J.C. Bilderbeek
Use remove_burn_in
to remove the burn-in
of a trace
estimates_all <- parse_beast_log(get_tracerer_path("beast2_example_output.log")) estimates <- remove_burn_ins(estimates_all, burn_in_fraction = 0.1) sum_stats <- calc_summary_stats_trace( estimates$posterior, sample_interval = 1000 ) testit::assert("mean" %in% names(sum_stats))